##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index18_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18771891	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.97573030868334	33.0	31.0	34.0	30.0	34.0
2	32.116439041756635	33.0	31.0	34.0	30.0	34.0
3	32.18340139520307	34.0	31.0	34.0	30.0	34.0
4	35.66586360425809	37.0	35.0	37.0	33.0	37.0
5	35.64494631894038	37.0	35.0	37.0	33.0	37.0
6	35.60149598141178	37.0	35.0	37.0	33.0	37.0
7	35.61913405527445	37.0	35.0	37.0	33.0	37.0
8	35.59414131479881	37.0	35.0	37.0	33.0	37.0
9	37.24216350925967	39.0	37.0	39.0	33.0	39.0
10-14	37.443327323816234	39.2	37.2	39.4	33.0	39.4
15-19	38.373666361050155	40.0	38.0	41.0	33.0	41.0
20-24	38.15908428191918	40.0	38.0	41.0	33.0	41.0
25-29	37.84224037951211	40.0	37.4	41.0	32.4	41.0
30-34	37.60100542880842	39.8	37.0	41.0	31.8	41.0
35-39	37.61692557238906	40.0	37.0	41.0	31.6	41.0
40-44	37.24893733934424	39.2	36.2	41.0	31.0	41.0
45-49	36.75043328346622	39.0	35.0	40.4	30.0	41.0
50-54	36.377526451650496	38.4	35.0	40.0	30.0	41.0
55-59	36.04137607660304	38.0	34.8	40.0	29.6	41.0
60-64	35.20486393192887	36.6	34.0	39.8	28.2	41.0
65-69	34.27126630982462	35.4	33.2	39.0	27.2	40.8
70-74	33.29497856129679	35.0	32.6	37.4	26.0	39.6
75-79	32.272002389104	35.0	31.6	36.2	24.6	38.8
80-84	31.177594798520836	34.2	31.0	35.0	22.0	36.8
85-89	29.918472997739013	34.0	30.2	35.0	11.4	36.0
90	28.81615379079284	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	235.0
11	2206.0
12	7061.0
13	14268.0
14	22437.0
15	31003.0
16	39269.0
17	46015.0
18	53293.0
19	61057.0
20	70936.0
21	82993.0
22	96561.0
23	113177.0
24	134306.0
25	159832.0
26	191348.0
27	230692.0
28	278951.0
29	338904.0
30	415525.0
31	514248.0
32	648166.0
33	841630.0
34	1144786.0
35	1650079.0
36	2504460.0
37	3487732.0
38	3692332.0
39	1864707.0
40	33682.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.75972138342376	11.799093655508655	9.31621646428695	55.12496849678064
2	21.245822410389952	18.49688506301856	36.80864175363551	23.448650772955975
3	25.518606822861432	20.841492958381476	22.14536493594951	31.494535282807583
4	27.740031459824767	26.986744854681383	18.812019072878517	26.46120461261533
5	29.44533927438826	29.381492476854937	21.411281253164624	19.761886995592178
6	24.656273701829	32.06631283300429	21.79133872005635	21.48607474511036
7	21.832591764631225	18.60106541435714	36.91763741417151	22.64870540684013
8	21.55512264109928	21.876222766668626	29.212966633334954	27.35568795889714
9	21.568767332401002	20.781661682401232	31.646889705951693	26.002681279246076
10-14	24.748057022170002	25.88548280220341	24.43928324886189	24.9271769267647
15-19	25.1541295322158	24.86198157242527	24.780606136186524	25.203282759172406
20-24	24.924666022384734	25.10465568136991	25.2118024289963	24.758875867249056
25-29	24.742756531351763	25.126396685357594	25.15847723812331	24.972369545167336
30-34	24.84391509451653	25.03867441601184	25.058307824570175	25.059102664901456
35-39	24.821102746518207	25.215895194785098	25.0331232019033	24.92987885679339
40-44	24.808275162763184	25.026183801738107	25.203010430551803	24.962530604946902
45-49	24.746732810962673	25.093524972283138	25.089614735799703	25.070127480954486
50-54	24.78538303073393	25.190587326697894	25.13735539304383	24.886674249524347
55-59	24.789784570491182	25.111707021110057	25.07854893944162	25.019959468957143
60-64	24.704076769820933	25.125850816210676	25.194627715798163	24.97544469817022
65-69	24.74133459285797	25.26519938652513	25.166736339361623	24.826729681255276
70-74	24.791041850529087	25.189131347404153	25.053675990962127	24.966150811104633
75-79	24.815726698046785	25.138540347204348	25.118010010723342	24.927722944025533
80-84	24.73553759356125	25.28185339095323	25.12567868471564	24.856930330769877
85-89	24.862072596647423	25.25531874110133	25.018817423729832	24.86379123852142
90	24.565035673747147	25.345682069931296	25.241400905964923	24.847881350356637
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.88468988020439
2	44.69447318334593
3	57.01314210566901
4	54.201236072440096
5	49.20722626998044
6	46.142348446939366
7	44.481297171471354
8	48.91081059999642
9	47.57144861164708
10-14	49.675233948934704
15-19	50.3574122913882
20-24	49.68354188963379
25-29	49.7151260765191
30-34	49.903017759417985
35-39	49.7509816033116
40-44	49.770805767710094
45-49	49.81686029191716
50-54	49.67205728025827
55-59	49.809744039448326
60-64	49.67952146799116
65-69	49.56806427411325
70-74	49.757192661633724
75-79	49.743449642072314
80-84	49.592467924331125
85-89	49.725863835168845
90	49.412917024103784
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	5.0
2	4.0
3	3.0
4	3.5
5	9.0
6	15.0
7	17.0
8	26.5
9	49.5
10	64.0
11	74.5
12	108.5
13	171.0
14	284.5
15	496.5
16	886.0
17	1507.5
18	2559.0
19	4533.5
20	5826.0
21	7903.0
22	13301.0
23	21568.0
24	33073.5
25	49059.0
26	70203.0
27	97021.0
28	126910.5
29	159083.5
30	176467.0
31	193012.5
32	229274.5
33	270223.5
34	314403.5
35	357015.5
36	398910.0
37	448000.5
38	491898.0
39	527823.0
40	546711.0
41	557632.5
42	582404.0
43	608756.5
44	625225.5
45	631804.5
46	633757.5
47	632649.5
48	634084.0
49	636334.0
50	636701.0
51	630700.5
52	626333.5
53	620550.5
54	617215.0
55	620976.5
56	616271.0
57	605715.0
58	589127.5
59	567075.0
60	555440.0
61	542781.5
62	514143.5
63	476825.5
64	432445.5
65	385714.0
66	337538.0
67	287751.5
68	241541.0
69	197582.5
70	174534.0
71	154448.0
72	117642.0
73	86490.5
74	59396.5
75	37419.5
76	22136.0
77	12012.0
78	5711.5
79	2468.5
80	1371.0
81	978.5
82	422.0
83	178.0
84	81.0
85	46.0
86	28.5
87	21.0
88	13.5
89	11.0
90	8.0
91	5.0
92	1.5
93	1.0
94	0.5
95	0.5
96	1.0
97	0.5
98	0.5
99	1.0
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.01754218581388524
3	0.03857895829461188
4	0.04748056549017891
5	0.05215777142537211
6	0.00492225317097782
7	0.020211069838408927
8	0.015869472073964205
9	0.013275167642940181
10-14	0.01841902874888843
15-19	0.008563868179289981
20-24	0.0043288126912733515
25-29	0.0020988828456333995
30-34	0.004396999748187329
35-39	0.0016300968293497975
40-44	9.098710406959001E-4
45-49	0.0034509043335058786
50-54	4.0592607319102803E-4
55-59	0.00319626829284274
60-64	9.652730244385075E-4
65-69	0.004197765691266799
70-74	0.004451336309165656
75-79	0.008624597276853994
80-84	0.00663651839870581
85-89	0.006688724114155575
90	0.0027914076424159933
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8771891E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.99641168382575
#Duplication Level	Relative count
1	100.0
2	30.025888780169602
3	15.431343770384867
4	9.478962818003914
5	6.508887801696021
6	4.834271037181996
7	3.647871819960861
8	3.0047292889758643
9	2.4359915198956297
10++	28.480715916503588
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4136615	2.6316435	5.5253296	1
CCTGG	4099015	2.58845	6.0196056	1
CTTCT	4104305	2.5217104	6.194597	1
CTGGA	3820060	2.449141	9.553831	1
TCCAG	3780495	2.372347	6.1267104	2
CTGCT	3731545	2.3243237	5.480035	1
CTCCT	3798540	2.3158507	8.765903	1
CTGGG	3514335	2.2673445	8.943328	1
CAGGA	3491030	2.254856	5.635007	1
CTTCA	3571965	2.2109778	6.321129	1
CTCCA	3539155	2.1737776	8.984144	1
CCCAG	3462345	2.1559474	7.5369377	1
CAGAA	3231890	2.0743935	5.0538545	1
CTCTG	3218490	2.0047493	6.9099936	1
CTGCA	3149360	1.9762955	5.25334	1
CTTCC	3193235	1.9468151	5.1904135	1
CTGGC	3007485	1.8991694	5.852281	1
TGGAA	2863115	1.8636564	5.402299	2
CTGAA	2881985	1.8361353	5.998154	1
CTTTT	2927215	1.8124744	5.2620707	1
CTGAG	2693795	1.7270631	5.2960706	1
CTCAG	2748820	1.7249475	6.884515	1
CTTTG	2714840	1.7041737	5.433784	1
CTGGT	2640345	1.6802839	5.5564017	1
CTTGG	2571875	1.6367104	5.681228	1
CTCCC	2524450	1.5272104	5.609169	1
>>END_MODULE
